BioLIMS SKILL

# Script path (absolute path)
SCRIPT="/home/biolims/.openclaw/workspace/skills/biolims/scripts/biolims.mjs"
Query order details
node "$SCRIPT" order ORDER202401180001
Paginated query of order list (default page 1, 10 per page)
bash "$SCRIPT" order-list
bash "$SCRIPT" order-list 1 20  # Page 1, 20 per page
Query order sample list
bash "$SCRIPT" order-samples ORDER202401180001
Query order fee information
bash "$SCRIPT" order-fees ORDER202401180001
Create new order (Note: field names must be exact!)
sampleOrderItem cannot be written as samples!
crmConsumeRmarkets cannot be written as fees!
bash "$SCRIPT" create-order '{
  "order": {
    "name": "John Smith",
    "productId": "PROD001",
    "productName": "Genetic Testing"
  },
  "sampleOrderItem": [
    {
      "slideCode": "BC123",
      "sampleTypeId": "T250724002",
      "sampleType": "Whole Blood",
      "productId": "PROD001",
      "productName": "Genetic Testing"
    }
  ],
  "crmConsumeRmarkets": [
    {
      "fee": 3500.00,
      "feeWay": "Bank Transfer",
      "isFee": "1"
    }
  ]
}'
Update order
bash "$SCRIPT" update-order '{"order":{"id":"ORDER123","name":"Jane Smith",...}}'
Complete order
bash "$SCRIPT" complete-order ORDER202401180001
Cancel order
bash "$SCRIPT" cancel-order ORDER202401180001
Query all sample types
bash "$SCRIPT" sample-types
Search sample types (fuzzy match by name)
bash "$SCRIPT" search-sample-type "Blood"
==================== Sample Receive Commands ====================
Query receive order list
bash "$SCRIPT" receive-list
bash "$SCRIPT" receive-list 1 20  # Page 1, 20 per page
Query single receive order details
bash "$SCRIPT" receive SR202401180001
Query receive order sample detail list
bash "$SCRIPT" receive-samples SR202401180001
bash "$SCRIPT" receive-samples SR202401180001 1 50  # Page 1, 50 per page
Scan barcode to get sample info (receive_id is required, must create receive order first)
Input format: { "sampleReceive": { "id": "...", "name": "...", "acceptDate": "...", "isBoard": "..." }, "barCode": "..." }
bash "$SCRIPT" scan-barcode BC20240118001 SR202401180001
Scan order number to get unreceived samples
bash "$SCRIPT" scan-order ORD202401180001
bash "$SCRIPT" scan-order ORD202401180001 SR202401180001  # Specify receive order ID
Create receive order (Note: field names must be exact!)
sampleReceiveItems cannot be written as samples!
addBoardInfo cannot be written as boardInfo!
bash "$SCRIPT" create-receive '{
  "sampleReceive": {
    "name": "Clinical Sample Receive",
    "acceptDate": "2024-01-18 10:00",
    "expressNum": "SF1234567890",
    "expressCompanyId": "EC001",
    "expressCompanyName": "SF Express",
    "transportTypeId": "TT001",
    "transportTypeName": "Cold Chain Transport",
    "isBoard": "1"
  },
  "sampleReceiveItems": [
    {
      "sampleCode": "S001",
      "barCode": "BC001",
      "orderCode": "ORD001",
      "patientName": "John Smith",
      "gender": "1",
      "dicSampleType": "Whole Blood",
      "dicSampleTypeId": "T250724002",
      "productName": "Genetic Testing",
      "sampleNum": "5",
      "unit": "ml",
      "isGood": "1",
      "nextFlow": "Warehousing"
    }
  ],
  "addBoardInfo": "{\"banHao\":\"P001\",\"rowNum\":8,\"colNum\":12}"
}'
Update receive order (uses same API as create-receive)
bash "$SCRIPT" update-receive '{"sampleReceive":{"id":"SR202401180001",...},...}'
Complete receive order
bash "$SCRIPT" complete-receive SR202401180001
Delete sample receive detail items
bash "$SCRIPT" delete-receive-item SR202401180001 "ITEM001,ITEM002"
Get available order list (for order number mode selection)
bash "$SCRIPT" get-orders-for-receive
bash "$SCRIPT" get-orders-for-receive 1 10  # Page 1, 10 per page
==================== Experiment Template Commands ====================
Query experiment template list
bash "$SCRIPT" et-list
bash "$SCRIPT" et-list 1 20           # Page 1, 20 per page
bash "$SCRIPT" et-list 1 10 "PCR"    # Fuzzy search by template name
Query template details (three-layer structure: template -> steps -> components)
bash "$SCRIPT" et-detail ET2024000001
bash "$SCRIPT" et-detail ET2024000001 edit   # Edit mode
Create template (pass JSON directly or read from file)
bash "$SCRIPT" et-create '{"templateName":"...","stepDetails":[...]}'
bash "$SCRIPT" et-create @/tmp/template.json
Copy template (deep copy, including attachments)
bash "$SCRIPT" et-copy ET2024000001
Cancel template (supports multiple IDs)
bash "$SCRIPT" et-cancel ET2024000001
bash "$SCRIPT" et-cancel ET001 ET002 ET003
Complete template (workflow callback, state -> 1)
bash "$SCRIPT" et-complete ET2024000001
Query all completed templates (for selection by other modules)
bash "$SCRIPT" et-all-completed
Query experiment types (query available types before creating template)
bash "$SCRIPT" et-exp-types
bash "$SCRIPT" et-exp-types-search "PCR"
Query approver list
bash "$SCRIPT" et-approvers 
Query experiment group list
bash "$SCRIPT" et-groups