Systematic Review Screener

Basic Screening

Run with default settings
python scripts/main.py --input references.csv --criteria criteria.yaml

With PRISMA Export

python scripts/main.py --input references.xml --criteria criteria.yaml \
  --output results/ --prisma --format excel

Confidence Threshold

python scripts/main.py --input refs.txt --criteria criteria.yaml \
  --threshold 0.8 --conflict-only

Environment Variables

export SCREENING_THRESHOLD=0.75  # Default confidence threshold
export BATCH_SIZE=100             # Records per batch
export MAX_WORKERS=4              # Parallel processing workers

Command Line Options

| Option | Description | Default | |--------|-------------|---------| | --input | Input file path | Required | | --criteria | Criteria YAML path | Required | | --output | Output directory | ./output | | --format | Output format: csv/excel/json | csv | | --threshold | Confidence threshold | 0.75 | | --prisma | Generate PRISMA data | False | | --conflict-only | Export only conflicts | False | | --batch-size | Processing batch size | 100 |